Enjoy Breakfast Egg Muffins recipe as an easy make-ahead breakfast for entertaining or as a grab-and-go option for busy mornings. Delicious frittata muffins are loaded with sausage, cheese, mushrooms, sweet potatoes, and peppers. 

breakfast egg muffins in muffin tins with chopped pepper around

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Make Ahead Breakfast Egg Muffins

A frittata muffin is the perfect way to start any morning. Scrambled eggs mixed with cheddar cheese, bacon or sausage, and veggies have that staying power to keep you satiated longer throughout the day.

I love breakfast egg muffins recipe because they are versatile and are a huge hit with family and guests. The ingredients are easily adaptable for different tastes and diets. Simply mix together the egg mixture and add any preferred meats, cheeses, or veggies.

Egg frittata muffins, like Cheddar Sausage Muffins or other gluten-free muffin recipes, also work well for entertaining. With the busy holiday time approaching, an easy egg muffin recipe will be your saving grace!

Make Ahead sausage egg cheese muffins are a perfect meal idea for overnight guests or a holiday breakfast. Baking them in muffin tins makes them conveniently portioned out for single servings, so reheat only what you need.

Egg muffin cups may be made, baked, refrigerated or frozen ahead of time. When ready to serve, simply thaw, and reheat in seconds! They make the perfect addition to a family brunch with grits, pancakes, scones, or granola!

Best Way To Store

After the breakfast egg muffins are baked completely they may either be enjoyed immediately or cooled and stored for meal prep. 

Allow them to cool for a few minutes in the muffin pan then use a knife to go around the edge and gently pop them out onto a wire rack. Cool completely if storing for later.

Transfer the baked egg muffins to an airtight container for freezer ziplock bag. Store in the refrigerator for 3 days or freeze for two months.

a close up of breakfast egg muffin cooling on a wire rack

How to Freeze

Breakfast Egg Muffins may be frozen up to 2 months. For optimal storage, wrap individual egg cups in plastic wrap then transfer to a freezer ziplock bag.

Thaw egg muffins in the refrigerator overnight or at room temperature for 1 hour. 

For more useful tips on freezing cooked eggs and different types of egg dishes that may be frozen, check out this helpful article.

Reheating tips

I find the best way to reheat egg muffins are to allow them to thaw first. However, if you are in a hurry they may also be reheated from frozen.

Set the microwave at 50% power when reheating so the scrambled eggs don’t overheat and become rubbery. If the egg frittata muffins are thawed, heat for 1 minute at 50% power. For frozen egg muffins, heat up to 3 minutes at 50% power.

Ingredients Notes

  • Breakfast sausage – Different meats may be substituted. See below for other suggestions to try.
  • Bell peppers – I used red bell pepper for sweetness and color, but any pepper may be used.
  • Mushrooms – Chop the mushrooms first before sautéing.
  • Sweet Potato – Dice the potatoes small so they cook in the skillet before mixing with eggs.
  • Green onions – Substitute chives, sautéed diced onions, or omit. 
  • Eggs
  • Shredded Cheese – Divide the cheese to mix with the egg mixture and save some for sprinkling on top before baking.
  • Salt and Pepper 
overhead shot of egg muffins on wire rack

Easy Adaptations

This recipe uses a combination of sausage, sharp cheddar, mushrooms, sweet potatoes, green onions, and peppers. Any of these ingredients may be omitted or try these substitutions!

  • Chopped cooked bacon
  • Turkey sausage
  • Ham or Canadian bacon
  • Chorizo
  • Other cheeses, such as cheddar, mozzarella, parmesan, colby jack, or pepper jack
  • Veggie Lovers – broccoli, chopped spinach (excess water removed), kale, artichokes, or tomatoes with a 1/2 teaspoon garlic powder added
  • Diced red potatoes 

Can I Use Egg Whites? 

Save calories in this make ahead breakfast by using one or all of these adaptations.

  1. Replace half the eggs with egg whites. For this recipe use 8 egg whites and 8 whole eggs.
  2. Reduce the amount of cheese, omit it, or use low fat cheese instead.
  3. Instead of sausage or bacon use turkey sausage, turkey bacon, or chopped ham instead.

How to Make Egg Muffins Recipe

images showing how to make egg muffins
images showing how to make breakfast egg muffins
  1. Preheat oven to 400ºF. Spray 24 muffin tins with cooking spray. Set aside.
  2. In a large non-stick skillet over medium high heat cook sausage about 5 minutes, stirring frequently and breaking up with spoon, until fully cooked. Transfer cooked sausage onto plate lined with paper towels. Leave residue grease in skillet.
  3. Add sweet potatoes to skillet and sauté for 5 minutes, stirring occasionally. Add mushrooms and peppers to potatoes and sauté 5 more minutes, or until veggies are soft. Remove from heat to set aside and cool. 
  4. In a large bowl whisk eggs, salt, and pepper. Add green onion, cooked mushrooms, peppers, sausage and 1 1/2 cup of cheese. Stir to combine.
  5. Pour egg mixture into greased muffin tins. Sprinkle remaining cheese on top of each egg muffin. Bake for 16 – 20 minutes, or until eggs are set in the middle.

Bonus tips

  • Make sure muffin cups are well greased with cooking spray. Paper liners may also be used.
  • This recipe may be made ahead of time completely and cooled to warm up for later.
  • Alternatively, cook the sausage and veggies ahead of time. When ready to bake, whisk eggs, stir in cooked meat, veggies, and bake.
  • Frittata egg muffin recipe may be halved or doubled.
  • If using frozen chopped spinach, squeeze out all excess water after thawing.
someone holding a bowl of egg muffins ready to be served

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overhead shot of egg muffins on wire rack
4.78 stars (9 ratings)

Easy Breakfast Egg Muffins with Sausage

Enjoy Breakfast Egg Muffins recipe as an easy make-ahead breakfast for entertaining or as a grab-and-go option for busy mornings. Delicious frittata muffins are loaded with sausage, cheese, mushrooms, sweet potatoes, and peppers. 

Ingredients
 

Instructions
 

  • Preheat oven to 400ºF. Spray 24 muffin tins with cooking spray. Set aside.
  • In a large non-stick skillet over medium high heat cook sausage, stirring frequently and breaking up with spoon, until fully cooked. Transfer cooked sausage onto plate lined with paper towels. Leave residue grease in skillet.
    1 pound breakfast sausage
  • Add sweet potatoes to skillet and sauté for 5 minutes, stirring occasionally. Add mushrooms and peppers to potatoes and sauté 5 more minutes, or until veggies are soft. Remove from heat to set aside and cool. 
    1 large sweet potato, 8 ounces fresh mushrooms, 1 red bell pepper
  • In a large bowl whisk eggs, salt, and pepper. Add green onion, cooked mushrooms, peppers, sausage and 1 ½ cups of cheese. Stir to combine.
    16 eggs, ½ teaspoon salt, ¼ teaspoon pepper, 4 green onions
  • Use a ¼ cup measuring cup or small ladle to scoop out egg mixture and fill greased muffin tins. Sprinkle remaining cheese on top of each egg muffin. Bake for 16 -20 minutes, rotating pans halfway through. Make sure eggs are set in middle.
  • Cool in pan 5 minutes, then run knife around edge to release and turn onto wire rack. Either serve immediately or cool completely to refrigerate or freeze.
Calories: 146kcal, Carbohydrates: 2g, Protein: 9g, Fat: 11g, Saturated Fat: 5g, Cholesterol: 133mg, Sodium: 273mg, Potassium: 161mg, Fiber: 1g, Sugar: 1g, Vitamin A: 1211IU, Vitamin C: 7mg, Calcium: 89mg, Iron: 1mg
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