If you are looking for gluten free breakfast ideas, these morning glory muffins made with gluten-free flour, carrots, apples, coconut, raisins, and a hint of orange are an easy recipe to start your day. Adding applesauce the muffin batter means the crumb is extra moist without requiring a lot of oil. Plus, these one-bowl gluten-free morning glory muffins use my favorite, simple GF muffin tricks so they bake up light and fluffy without a gummy, dense texture!

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Gluten-Free Morning Glory Carrot Muffins
When I developed this gluten-free recipe for morning glory muffins, I first turned another successful recipe, easy gluten-free zucchini muffins, because they also contain an increased amount of moisture,
When approaching muffin recipes made with both gluten-free all purpose flour and high-water content ingredients, like grated carrots and apples, there are simple expert GF baking tips to keep in mind.
First of all, gluten-free flour does not absorb liquids as well as wheat flour. This causes problematic issues such as a gummy, dense texture or tops that sink after baking. Many recipes don’t do enough to account for this hurdle. This is why it is important to use well-tested gluten-free muffin recipes with guaranteed, consistent results!
These homemade gluten-free carrot muffins compensate for the extra moisture in a few ways. First of all, instead of using all oil for the fat, a combination of oil and applesauce is used. Both ingredients retain moisture for a tender crumb, but unlike oil, applesauce more readily saturates GF starches. This easy trick comes in handy for these epically easy gluten-free apple fritters as well.
Classic morning glory muffins have a hearty combination of grated carrots, apples, and a variety of other mix-ins, such as raisins, shredded coconut, and nuts. Due to the larger amount of mix-ins, it requires less GF flour to build structure.
A reduced amount of flour also means risking the muffins crumbling while enjoying. Therefore I used my favorite GF muffin hack – let the batter rest for 15 minutes before baking – to yield a softer, fluffier texture. Resting gives time for the gluten-free starches to hydrate, absorb moisture, and bind the ingredients.
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Ingredient Tid Bits
The beauty of these easy morning glory muffins is how adaptable they are for varying snack preferences. Similar to almond flour carrot cake, they have a lovely cinnamon-spiced flavor, but additions such as shredded coconut or nuts may be omitted, if preferred.
- Gluten-free Flour – Typically I recommend Cup4Cup GF flour for baked goods, but this recipe works well with a variety of gluten-free flour blends. All the ingredients are dairy-free as well, so if that is a dietary consideration for you, be sure the flour you choose does not contain milk powder.
- Applesauce – I used unsweetened applesauce so no additional sugar was added to the recipe. However, if you only have sweetened applesauce on hand, that will work as well.
- Oil – Use any preferred oil, such as melted coconut oil, canola, avocado, grapeseed, or olive oil.
- Grated carrots and apples – To grate, peel the carrots and apples and use a box grater or grating disc with a food processor. If you’d like to add crushed pineapple to the recipe, I recommend replacing 1/2 cup shredded apples with well-drained crushed pineapple.
- Sweetener – A combination of light brown sugar and honey is used for sweetness and structure. The honey may be replaced with pure maple syrup and brown sugar with coconut sugar, but for best results keep the combination of wet and dry or it will alter the texture.
- Orange – I tested the recipes without orange and with, and I highly recommend using it for maximum flavor! You will only need 1 orange, zested, and then juiced to add a nice citrus flavor to the muffins.
- Mix-ins – Morning glory recipes vary for optional add-ins, so I added a bonus section below with alternatives and more suggestions. Any of these suggested add-ins would work great in spiced muffin recipes.
Let’s Make This Together!
(Below shows step-by-step photos and modified instructions. For the complete recipe, along with ingredient amounts, scroll down to the recipe card.)




- This muffin recipe makes 16 servings. Prepare a muffin pan with paper liners and set aside.
- In a large bowl, whisk together the wet ingredients – applesauce, brown sugar, oil, honey, eggs, orange zest, orange juice, and vanilla extract.
- Stir in the grated carrots, apples, raisins, coconut, and pecans. Then stir in the remaining dry ingredients.
- This is when the muffin batter will rest slightly before baking. Preheat the oven to 350ºF. Use a large trigger scoop to divide the batter between the liners, almost to the top. Set aside for 15 minutes while the oven finishes preheating.
- Bake for 25 minutes, rotating the pans halfway through. They are done when the tops are fully set and a toothpick comes out clean. Cool slightly before enjoying!

Extra Yummy Modifications
When adapting these carrot muffins to your own preferences, some ingredients need to stay the same for the recipe’s success, but many can be swapped out. See some workable recipe adaptations below.
- Nuts – Although pecans are listed in the recipe, any preferred nut or seed may be used, such as walnuts, almonds, macadamia nuts, pepitas, sunfloweer seeds, or simply omit as well.
- Raisins – This may also be left out or swapped with other dried fruit, such as golden raisins, dried cranberries, cherries, or chopped dates.
- Trail mix – For a variety of flavors replace the coconut, nuts, and raisins with an equal amount of trail mix. Read ingredient labels to make sure the mixture is gluten-free!
- Flaxseed – Classic morning glory muffins use whole wheat flour, which can’t be used in a gluten-free recipe. For a hearty, “whole grain” taste and added nutritional benefits, add up to 2 tablespoons whole or ground flaxseed. This is baking trick I also used when creating these wholesome oat bran muffins as well.
- Crushed pineapple – To add to the recipe, I recommend replacing 1/2 cup shredded apples with well-drained crushed pineapple. Be sure to give the pineapple a squeeze to release excess juice. You will want to measure the pineapple after it has been drained.

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Did you make this recipe? I love hearing from you! Leave a star rating and comment below the recipe card. It helps others when searching for recipes and I appreciate feedback from our community. You will always hear back from me! -Melissa

Moist Gluten-Free Morning Glory Muffins (One Bowl)
Ingredients
- ½ cup unsweetened applesauce
- ½ cup (117 g) packed light brown sugar
- ¼ cup (53 g) oil, any preferred
- ¼ cup (85 g) honey
- 2 large eggs
- 2 teaspoons orange zest
- ¼ cup (28 g) orange juice, squeezed from zested orange
- 2 teaspoons vanilla extract
- 1 cup (116 g) grated carrot, peeled first (about 1 large)
- 1 cup (118 g) grated apple, peeled first (about 1 large)
- ½ cup (85 g) raisins
- ½ cup (40 g) shredded coconut
- ½ cup (63 g) chopped pecans
- 1 ½ cup (214 g) gluten-free all purpose flour
- 2 teaspoons baking soda
- 2 teaspoons ground cinnamon
- ½ teaspoon ground ginger
- ¼ teaspoon salt
Instructions
- Line standard-size muffin cups with paper liners or grease with nonstick cooking spray. The oven preheats later while the muffin batter rests. (This allows time for the gluten-free starches to soften and hydrate with the liquids.)
- In a large mixing bowl, whisk together the applesauce, brown sugar, oil, honey, eggs, orange zest, orange juice, and vanilla extract.½ cup unsweetened applesauce, ½ cup packed light brown sugar, ¼ cup oil, ¼ cup honey, 2 large eggs, 2 teaspoons orange zest, ¼ cup orange juice, 2 teaspoons vanilla extract
- Stir in the grated carrots, apples, raisins, coconut, and pecans. Then stir in the remaining dry ingredients. Stir well until no flour pockets remain.1 cup grated carrot, 1 cup grated apple, ½ cup raisins, ½ cup shredded coconut, ½ cup chopped pecans, 1 ½ cup gluten-free all purpose flour, 2 teaspoons baking soda, 2 teaspoons ground cinnamon, ½ teaspoon ground ginger, ¼ teaspoon salt
- Preheat the oven to 350ºF. Use a large trigger scoop to divide the batter between the cupcake liners. The batter will come up almost all the way to the top (see pic in post). The batter will make 16 muffins. Set aside for 15 minutes while the oven finishes preheating.
- Bake for 25 minutes, rotating the pans halfway through. They are done when the tops are fully set and a toothpick comes out clean. With gluten-free baking, it's better to slightly error on the side of over baking because sometimes they look "done" before they are set all the way through. Cool in pan for 5 minutes before turning onto a wire rack.
Notes
Storing and Freezing Tips
Once they have completely cooled, store in an airtight container up to 2 days at room temperature. Do not store in the fridge, or they will dry out. Also, covering the muffins with plastic wrap will trap moisture and make the tops slightly wet. Loosely covering with foil is a better option. For optimal freshness, I freeze GF muffins right away since they don’t stay fresh as long and moisture evaporates quickly. Wrap the cooled and set muffins in plastic wrap and place in a freezer-safe container or freezer bag up to 3 months.This post contains affiliate links. My opinions are always my own. If you purchase a product through an affiliate link, I make a small commission – at no cost to you. Read full disclosure policy here.



This recipe packs in so many great flavors -apples, carrots, pecans, coconut, and raisins ! The applesauce in batter makes these muffins really moist. I made these for my friend who is gluten -free , and she asked for the recipe. Whether or not you are gluten free, give these muffins a try !
Thanks so much for leaving this note, Sandra!
Best,
Melissa
I have tried a few other recipes, and this one is by far the best.
Thanks so much for sharing, Katie! I appreciate it!
Best,
Melissa
The muffins taste amazing. I let them set for 15 min before baking but they fell apart we had to eat with a spoon..
What did I do wrong
Hi Katherine,
Huh, I haven’t had this happen. How was the texture? Was it dry or it didn’t just bind together? What brand of GF flour did you use?
Best,
Melissa
I made these today and they tasted delicious but didn’t look too good. The dough seemed pretty loose and when they baked they fell in the middle. Not sure what happened but definitely the dough was too wet. Any ideas? I haven’t baked gluten free before and made them for my grandson. I used almond flour.
Hi Bonnie,
I’m so glad you wrote so I could help you get this figured out! It was using almond flour that was the problem. Unfortunately you can’t swap out a GF all purpose flour, like what this recipe was designed for, with almond flour. Almond flour has a lot more fat, moisture, and will need completely different ingredient ratios. I do have some almond flour muffin recipes on the site you could use or grab a bag of GF all purpose flour for the other recipes. Let me know if you have any other questions!
Best,
Melissa
Perfect! We live at altitude so I made adjustments in flour (1/4 c +) and soda ( 1/4 tsp -). Color darker but otherwise great! Did sub coconut sugar for brown, 1/4 tsp cloves for ginger (hubby doesn’t care for), and baked in cast iron muffin pan. Time same, temp + 15 degrees. So happy! Just trying gluten free baking at altitude.
Thanks for sharing these details, Becky! I appreciate it.
Best,
Melissa
I was diagnosed with celiac disease only a few months ago. I’ve tried other muffin recipes, but they weren’t nearly as moist. These are really tasty and absolutely wonderful.
The only tweak I made was adding 1/4 tsp. of xanthan gum with dry ingredients. Otherwise, I followed the recipe to a ‘T’!
Thanks for taking the time to comment, Debbie! I appreciate it.
Best,
Melissa
I’m getting ready to make these muffins for my grandson, but he cannot have eggs so trying to find a sub substitution or does this recipe really need to have the two eggs?
Hi Bonnie,
Have you tried making flax seed eggs? I think those would work with this.
Best,
Melissa
Can I use butter instead of oil?
Hi Robin,
Yes, as long as it’s melted.
Best,
Melissa
Thank you
I messed up as had so many interruptions. Didn’t have raisins but cut up a cup of dried apricots (about raisin size) and soaked. Was a little shy on apple, carrot and juice. It didn’t matter – these came out absolutely delicious! Will definitely make again.
Oh, yay! I have definitely been there with the constant interruptions. Thanks for taking the time to share, Caryla!
Best,
Melissa
These are absolutely delicious. They are also healthy and filling.
Thanks, Ruth! I appreciate you commenting.
Best,
Melissa
These are delicious! My new go to. I used ginger flavored honey and added a few squeezes of fresh ginger from the tube instead of ground ginger. I also used half coconut sugar and skipped the raisins to help with the glycemic index. I absolutely love these.
I appreciate this so much, Lisa! Thank you for taking a moment to drop me a line.
Best,
Melissa
How many carbs in one muffin.
My apologies, Patricia! I didn’t realize I didn’t have the nutritional info there. All fixed now. 28 grams.
Best,
Melissa
These muffins are the best! Perfect texture and flavor! Thank you!
Lovely to hear, Lura! Thank you so much for sharing!
Best,
Melissa
Amazing flavor and texture! Wonderful that they are packed with nutrition for all around perfect muffin!
Thank you so much, Sonya! I really appreciate the time you took to let me know! 🙂
Best,
Melissa
Just made these and yum! They are delish. They are moist & full of flavor. Thank you for sharing the recipe!
So happy to hear, Paige! Thank you so much for taking the time to share!
Best,
Melissa
These were soooo good! I need gluten free dairy free recipes and I have often gone to your website!
This is definitely a keeper in my recipe book! Thank you!!
Thank you so much, Carol! I appreciate this immensely!
Best,
Melissa
Has anyone made this in a bread loaf pan and if so, how did it turn out?
Hi Carrie,
I haven’t, but I don’t think it would be problem. I’m guessing it would take around 45 minutes??
Best,
Melissa
Can I use oat flour instead of GF flour?
Hi Sarah,
I wouldn’t recommend it for this recipe, but you can use this oat flour muffin recipe and add in the spices, raisins, carrots to make an oat flour version! Let me know if you have any questions.
Best,
Melissa
Hi Melissa. I am looking for a wheat and almond free or gluten free rusk recipe. I have tried several recipes that I found on internet and they all taste horrible. They are heavy and dont soak nicely in morning tea. They also dry so hard it almost break my teeth.
Reading this nice muffin recipe I am inspired to bake them. Please can you also help with a rusk recipe I would really appreciate it. Regards Anne Mouton(RSA)
Hello,
I’d love to help, but first I want to make sure of what you are looking for. By rusk do you mean something like biscotti? A twice-baked sliced bread to dip in coffee? If so, you can find a gluten-free biscotti recipe on the website that is completely adaptable to different flavors. Let me know if you have any questions!
Best,
Melissa
I used avocado oil and added 2 Tbsp ground flaxseed. Otherwise, I kept the recipe as is. These are so yummy! Finally a GF muffin that rises and tastes good and isn’t gummy! I want to eat them all right now! Thank you for this amazing recipe!
I really appreciate this, Heather! I really hope you give other muffin recipes on the site a try too! I’m never a fan of gummy and spend a lot of time with recipe development to avoid this!
Best,
Melissa
You are so welcome Melissa! I’m happy to share specific ingredients/Brands I used if that would be helpful for anyone. And I will definitely check out some other recipes and try them too! 🙂
Amazing! So good that I “Pinned” and added this recipe to my book.
Notable tweaks:
– I halved the brown sugar.
– I doubled the recipe and only had enough applesauce for one serving. I used half a cup AVC and half a cup maple syrup to replace the amount.
– I added half a cup of ground flaxseed.
These were so delicious my husband had to confirm they’re GF lol 🙂 and My 5 y/o and 2.5 y/o really enjoyed them.
Sorry, it was 1/4 cup ACV & 1/4 cup maple syrup* 😄
Love this, Becca! I love when readers write in with their modifications. So helpful for others!
Best,
Melissa
These are wonderful!!!! Very moist and flavorful. I left the honey out and used the 1/2 cup of brown sugar. They definitely were sweet enough. If you prefer less sweet maybe try decreasing the amount of sugar used. I also made my own applesauce, which was sweet. ( I can’t remember the name of the apples I used ) The kind of apple used might affect the level of sweetness so keep that in mind. I also used the tiny muffin size and ended up with 38 muffins :). All in all, I would rate these muffins as 5 out of 5.
Thank you so much! I love all the recipe notes. It’s so helpful for others looking to make adaptations to the recipe as well. Thank you for taking the time to share 🙂
Best,
Melissa